murefi
latest
Examples
The
ParameterMapping
Example: Modelling an enzymatic reaction with Michaelis-Menten kinetics
Differentiable ODE models with
murefi
and
sunode
API Reference
murefi.datastructures
murefi.core
murefi.ode
murefi.symbolic
murefi.objectives
murefi
Index
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Index
A
|
B
|
C
|
D
|
F
|
G
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
A
as_dataframe() (murefi.core.ParameterMapping method)
B
BaseODEModel (class in murefi.ode)
bounds (murefi.core.ParameterMapping property)
C
coords (murefi.core.ParameterMapping property)
D
Dataset (class in murefi.datastructures)
DtypeError
dydt() (murefi.ode.BaseODEModel method)
F
for_dataset() (in module murefi.objectives)
G
get_observation_booleans() (murefi.datastructures.Replicate method)
get_observation_indices() (murefi.datastructures.Replicate method)
grad() (murefi.symbolic.IntegrationOp method)
guesses (murefi.core.ParameterMapping property)
I
infer_shape() (murefi.symbolic.IntegrationOp method)
IntegrationOp (class in murefi.symbolic)
is_distribution (murefi.datastructures.Timeseries property)
L
load() (murefi.datastructures.Dataset static method)
load_dataset() (in module murefi.datastructures)
M
make_hash_sha256() (in module murefi.symbolic)
make_hashable() (in module murefi.symbolic)
make_node() (murefi.symbolic.IntegrationOp method)
make_template() (murefi.datastructures.Dataset static method)
(murefi.datastructures.Replicate static method)
make_template_like() (murefi.datastructures.Dataset static method)
mapping (murefi.core.ParameterMapping property)
merge_vectors() (murefi.core.ParameterMapping method)
module
murefi.core
murefi.datastructures
murefi.objectives
murefi.ode
murefi.symbolic
murefi.core
module
murefi.datastructures
module
murefi.objectives
module
murefi.ode
module
murefi.symbolic
module
N
named_with_shapes_dict() (in module murefi.symbolic)
ndim (murefi.core.ParameterMapping property)
O
order (murefi.core.ParameterMapping property)
P
ParameterMapping (class in murefi.core)
parameters (murefi.core.ParameterMapping property)
perform() (murefi.symbolic.IntegrationOp method)
predict_dataset() (murefi.ode.BaseODEModel method)
predict_replicate() (murefi.ode.BaseODEModel method)
R
Replicate (class in murefi.datastructures)
repmap() (murefi.core.ParameterMapping method)
S
save() (murefi.datastructures.Dataset method)
save_dataset() (in module murefi.datastructures)
ShapeError
solve_sunode() (in module murefi.symbolic)
solver() (murefi.ode.BaseODEModel method)
solver_vectorized() (murefi.ode.BaseODEModel method)
T
t_any (murefi.datastructures.Replicate property)
t_max (murefi.datastructures.Replicate property)
theta_names (murefi.core.ParameterMapping property)
Timeseries (class in murefi.datastructures)
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